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Genetics and Syndromes

  • Metabolic

For full rundown on all syndromes, go to OMIM, where you can search by clinical feature. There are no images unfortunately, but there is a small collection at Genetics Image Catalogue. For definitions of genetic terms eg anticipation, go to Geneclinics.org where there is an illustrated glossary. Conditions affecting only 1 system eg Osteogenesis imperfecta can be found under system.

  • About 50% of human genes do alternative splicing - different proteins from same gene by splicing out of specific exons as well as introns. ?control? One reason why limited gene numbers can be responsible for biological complexity.
  • Proteomics is study of protein variability and function in cell. Some genes code only for RNA which never gets transcripted, regulatory functions. Microarray is fast way of scanning DNA eg finding deletions, or looking for active genes - 22000 probes on one slide.
  • Genomic karyotype more sensitive than old karyotype (so anything done in 90s may be worth repeating).
  • Telomere kit: looks for end of chromosome. More sens than Karyotype - hence new phenotypes being discovered eg 22q + learning diffs.
  • A diagnosis of Downs syndrome in an adult may never have been confirmed on karyotype - ?misdiagnosis of some other deletion.
  • Mosaicism (1-2% of normal pop) can be an explanation for uniparental disomy.
  • Imprinting as competition between male/female influences on survival of pregnant mother (small baby) vs big baby.

Ownership of Genetic information

Arguably owned jointly by all family members! But linkage studies (where patterns of DNA through families studied) are done rarely now cf specific gene tests. Although there may be a moral imperative for information to be shared, as in STIs, there is rarely an urgent need, and moral does not equate to legal obligation.

Edward's

Trisomy 18, occurs 1 in 8000 births.

  • Facies: small chin, large occiput. Short palpebral fissures so hypotelorism. Low set, malformed ears.
  • Overlapping fingers, short hallux (characteristic), rockerbottom feet (=vertical talus).
  • Short sternum characteristic.
  • Cardiac (90%) and renal abnormalities.

Patau's

Trisomy 13, occurs 1 in 14000 births.

  • Facies: cleft palate, microphthalmia/coloboma/cataract. Low set, malformed ears.
  • Similar ears, worse eyes, plus cleft.

  • Polydactyly
  • Holoprosencephaly
  • Aplasia cutis of scalp
  • Cardiac (90%) and renal abnormalities.

Chromosome 22q11 microdeletion

The syndrome of chromosome 22q11 microdeletion includes congenital heart disease, cleft palate or velopharyngeal insufficiency, hypocalcaemia, renal anomalies, recurrent coughs and colds, learning difficulties, speech delay, and behaviour problems. See Immunology.

TAR

The thrombocytopenia-absent radius (TAR) syndrome is characterised by both thumbs being present! (absent thumbs suggest other syndromes). Thrombocytopenia usually presents in early infancy but may be transient and tends to remit in later childhood. The main conditions which might be mistaken for TAR syndrome are Holt-Oram syndrome, Roberts syndrome, Fanconi anaemia, thalidomide embryopathy.

The thumbs, though present, are always either hypoplastic or proximally placed. Most have relatively mild arm malformation with normal shoulder girdle and normal strength. Others have more marked limb shortening with underdevelopment of the ulna, humerus, shoulder girdle and reduced strength or phocomelia. Lower limb abnormalities are common.

Cow’s milk intolerance affects almost half and is severe, even requiring TPN! Other associated abnormalities include renal, cardiac and facial anomalies. Chromosome analysis is unhelpful. The pattern of inheritance remains unclear but there is definitely a recurrence risk.

Prader Willi

Chromosome 15, paternal deletion else mat uniparental disomy. Thick secretions ("string sign"). Normal hands/feet as baby (small when older). Almond eyes, micropenis, poor feeding, hypotonia. Later hyperphagia and obesity, mental retardation.

Prader Willi parents support group

Lysosomal storage disorders

The lysosome is an organelle containing enzymes. Produced in the Golgi apparatus, fuse to vacuoles to disperse enzymes, important in autolysis (hence "suicide bags"). Many examples:

  • Gauchers (non neuropathic, presents with bone marrow infiltration) can be treated with Glucocerebrosidase.
  • Anderson-Fabry (X-linked, but females also affected to a degree) presents variously: HOCM, neuropathy, nephropathy, stroke, epilepsy!) can be treated with agalsidase. Expensive!
  • Mucopolysaccharidoses
  • Pompes disease
  • Niemann-Pick disease

Fragile X

Fragile X mental retardation syndrome is a major cause of learning disability associated with a trinucleotide repeat expansion. Called Fragile X because under certain growth conditions, the chromosome has a tendency to break at this site (called the FRAXA site, to differentiate from other fragile sites on the X chromosome also associated with mental retardation, FRAXE and FRAXF).

  • Most common heritable cause of mental retardation in males
  • Second most common genetic cause of mental impairment after trisomy 21

Clinical features:

  • Moderate to severe mental retardation (average IQ 42)
    • Speech delay
    • Autism
    • ADHD
  • Macroorchidism (evident post-pubertally)
  • Distinct facies
    • Long face
    • Large ears
    • Prominent jaw
    • High arched palate
  • Tall stature
  • Hypermobility
    • Mitral valve prolapse
  • Epilepsy (20%)

The problem is usually an expansion of trinucleotide repeat sequences at Xq27.3, affecting the FMR1 gene with (CGG)n repeat expansion of more than 200 repeats. Although the full syndrome is seen in males, females can be mildly affected, as can male carriers (about 50% show clinical features). The FMR1 genes produces the FMRP protein, which interacts with the mGluR5 glutamate receptor. Absence leads to long term depression in brain synapses. Consider it a spectrum of clinical manifestations seen with different numbers of trinucleotide repeats. The expansion anticipates in females carriers, not in males.

Fragile X tremor/ataxia syndrome is seen with premutations, ie 55 to 200 repeats. Presents as late as the sixth decade in men, with progressive intention tremor, Parkinsonism, cognitive decline. In women, associated with premature ovarian failure.

Fish Odour

Differential diagnosis is precocious puberty. Diagnosis: urine for trimethylamines. Secondary form exists, due to bacterial overgrowth: treat with metronidazole.

VATER and VACTERL

VATER is a mnemonically useful acronym for

  • vertebral defects,
  • anal atresia,
  • tracheoesophageal fistula with
  • esophageal atresia,
  • and radial dysplasia.

Nearly all cases have been sporadic, with no recognized teratogen or chromosomal abnormality. More common in infants of diabetic mothers. The VATER association was later expanded to the VACTERL association. VACTERL is an acronym for

  • vertebral anomalies,
  • anal atresia,
  • cardiac malformations (Ventricular septal defects, Patent ductus arteriosus, Tetralogy of Fallot, Transposition of the great arteries),
  • tracheoesophageal fistula,
  • renal anomalies (urethral atresia with hydronephrosis), and
  • limb anomalies (hexadactyly, humeral hypoplasia, radial aplasia, and proximally placed thumb).

Diagnosis made if 3/7 defects are present.

CHARGE

CHARGE stands for:

  • coloboma of the eye;
  • heart anomaly (ToF, ASD, DORV);
  • atresia, choanal;
  • retardation of mental and somatic development;
  • microphallus (hypogonadism hence delayed pubertal development in both sexes);
  • ear abnormalities and/or deafness.

Note that none of the letters used in the acronym are the same as used in VACTERL.

Facial palsy, cleft palate, and dysphagia are commonly associated.

The term CHARGE should be restricted to infants with multiple malformations and choanal atresia and/or coloboma, combined with other cardinal malformations (heart, ear, and genital), for a total of at least 3 cardinal malformations; growth retardation, especially low birth weight, should not be used in the definition.

Mostly isolated, mutation in CHD7 gene (associated with increasing paternal age).

Turners

45XO but mosaics occur.

  • Short stature
  • facial naevi, sphinx like bright eyes
  • Webbed neck
  • Puffy hands and feet as baby
  • Cystic hygroma ie soft tissue mass in neck or intra-thoracic
  • Streak ovaries ie infertile
  • middle ear probs
  • learning difficulties - not really, but maths can be a problem

Downs syndrome

Trisomy 21. Features are:

  • Hypotonia
  • Downward slanting palpebral fissures
  • Prominent tongue (anterior position)
  • Small, simple ears
  • Brachycephaly
  • Single palmar crease
  • Sandal gap - space between 1st and 2nd toes
  • Brushfield spots - yellow spots in the iris

Differential is Zellwegers. Rapid diagnosis is now done by PCR (previously FISH).

In the antenatal/neonatal period, particular problems include:

  • Congenital heart disease
  • Duodenal atresia
  • Hypoplastic colon
  • Polycythemia unrelated to heart disease
  • Platelets are large and counts is often slightly low
  • Transient abnormal myelopoiesis - see Haematology. Looks like leukaemia but mostly asymptomatic and usually resolves without treatment.

Complications include:

  • Blood Disorders/Leukaemia esp Acute megakaryoblastic Leukaemia (AMKL)
  • Cervical spine instability
  • Coeliac Disease/Gluten Sensitivity
  • Congenital Heart disease
  • Growth
  • Hearing problems
  • Immunisation
  • Inflammatory Arthropathy
  • Ophthalmic problems
  • Respiratory Disorders
  • Sleep related upper airway obstruction
  • Thyroid Dysfunction
  • Type 1 Diabetes
  • Macrocytosis is seen in red cells. Platelet count often high in infancy cf low in neonate

See Practical for breaking the diagnosis.

Downs syndrome medical Interest Group for doctors, for parents.

Mucopolysaccharidosis

  1. Hurler - actually 3 types, Hurler, Scheie or Hurler-Scheie. Hurler is the most severe: hernias, regression at age 2-4 yr (enzyme does not cross blood brain barrier), characteristic facies with short spine, hepatosplenomegaly, joint probs, cloudy corneas. Airway probs. Die of cardiac failure. BMT if diagnosed under 15/12. Scheie is milder, can have normal intelligence, may have problems with nerve compression, aortic valves.
  2. Hunter very similar to Hurler except no cornea clouding, whitish skin lesions. May get hydrocephalus. There is a mild form that may not appear until after 10yrs.
  3. Sanfilippo - bad neurology esp dementia, behaviour. Facial changes, thick skin and growth arrest only noticeable after age 10.
  4. Morquio - bad skeletal changes but normal intelligence unless hydrocephalus causes probs. Nerve compression.
  5. Maroteaux-Lamy looks like Hurlers incl heart probs but normal intelligence.
  6. Sly - v rare, neuro and skeletal.

Zellwegers

Cerebrohepatorenal syndrome. Omim #214100.

  • Characteristic facies - round, flat, high forehead, micrognathia. Upward slanting palpebral fissures, epicanthic folds, so can sometimes look a bit like Downs.
  • Turribrachycephaly, similarly
  • Abnormal brain, with demyelination, colpocephaly, pachygyria.
  • Severe mental retardation, hypotonia, seizures
  • Hepatomegaly
  • Hydronephrosis, Renal cortical microcysts

Diagnosis is by reduced DHAP-AT activity. Clues are high iron, high very long chain fatty acids, and low plasmalogens (peroxisome product).

Death usually in first year.

Metabolic

Homocystinuria - high arched palate, malar rash, lens dislocation by 8yr (preventable), osteoporosis, thromboembolism.

Pompes - lysosymal so no hypoglycaemia, muscle weakness, cardiomyopathy with large QRS, recurrent RTIs. No bone involvement. Late onset - proximal muscle weakness @30yrs! Gene therapy research has been knocked back after death in US of patient due to virus agent.

Galactosaemia

Actually 3 different gene defects possible, most commonly Galactose-1-Phosphate uridyl transferase deficiency (GALT, or Gal-1-PUT). The others have different phenotypes.

Presents in the newborn period after initiation of milk feeding, most commonly with jaundice, which can be unconjugated in first week but becomes conjugated thereafter. The other features listed below are seen in only a minority:

  • Vomiting, poor feeding
  • Hypotonia
  • Hepatomegaly
  • Encephalopathy
  • Cataract - can be present at birth, but more usually after a week or two.
  • Sepsis - esp E coli septicaemia
  • Lab findings include hypoglycaemia, deranged LFTs, coagulopathy, metabolic acidosis, abnormal urine aminoacid excretion. Urine for reducing substances is not sensitive or specific. The definitive test is RBC Gal-1-PUT activity, but if a transfusion has been given alternatives are genotyping or testing the parents for carrier status.

    Management is by diet. Nonetheless, neuropsych problems usually develop in adolescence and ovarian failure often occurs. Some debate about whether galactose can be tolerated from age 2-3yr.

    Ammonia

    Transient hyperammonaemia seen in the under 32/40s - responds to bolus arginine.

    Treatment:

    • Arginine + benzoate (mops up NH3 in form of glycine)
    • Phenylbutyrate only for proven urea cycle (toxic in organic acidaemia eg methylmalonic, propionic)
    • Hypercaloric feeds/fluids +/- insulin
    • Dialysis for NH3 350-600 esp rising
    • Carbaglu = N acetyl glutamate synthetase, V exp but v effective, safe (NG) pending dialysis for organic acidaemias. No effect in urea cycle defect.

    Mitochondrial Disorders

    Includes Mitochondrial myopathies eg MELAS & MERFF, Lebers optic atrophy, Leigh disease. Fatty acid oxidation disorders, plus lysosomal storage disorders (see above).

    Carnitine palmitoyltransferase (CPT) deficiencies

    Fatty acid oxidation defects. 2 types of CPT -

    • L-CPT1 deficiency - recurrent attacks of fasting hypoketotic hypoglycemia.
    • CPT2 deficiency - several clinical presentations.
      • Adult form: episodes of rhabdomyolysis triggered by prolonged exercise.
      • Infantile form: severe attacks of hypoketotic hypoglycemia, occasionally associated with cardiac damage (hence sudden death before 1 year of age).
      • Neonatal form: as above, plus features of brain and kidney dysorganogenesis; almost always lethal during the first month of life.

    Treatment: avoid fasting and/or exercise, a low-fat diet enriched with medium chain triglycerides and carnitine.

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